Changelog

Source: NEWS.md

planet 1.9.4

planet 1.9.3 (09-08-2023)

  • add stop controls to predictEthnicity
  • added some tests
  • Bioconductor version bump

planet 1.9.2

  • Bioconductor version bump

planet 1.9.1

  • Bioconductor version bump

planet 0.99.4 (03-10-2021)

  • Combined vignettes into a single one
  • Updated references

planet 0.99.3 (01-22-2021)

  • Update reference for cell composition
  • Accepted into bioconductor, will be released in next cycle

planet 0.99.2 (01-07-2021)

  • Vignettes updated with new function names
  • Removed minfi from examples since installation fails on some R versions
  • Moved .orig files to inst/script
  • Moved data-raw/ contents to inst/script
  • Moved man/figures/logo.png to inst/figures/logo.png, updated README
  • Lazydata set to false

planet 0.99.0 (12-18-2020)

  • Improved vignette figure quality
  • Using github-actions check from biocthis
  • Removed viridis from suggests
  • Rewrote many data man pages

planet 0.3.0 (12-17-2020)

  • Final preparations for Bioconductor submission
  • Changed license to => GPL-2
  • More detailed attribution to glmnet
  • Renamed all functions to camel case convention, including functions, data, tests, documentation, vignettes
  • Added planet-deprecated.R
  • pl_infer_ethnicity() and pl_infer_age() now deprecated, replaced with predictEthnicity and predictAge, respectively.

planet 0.2.36 (12-17-2020)

  • Removed minfi dependency
  • Addressed all fixable >line80 and 4 space indent notes from BiocCheck
  • Precompiling vignettes.

planet 0.2.35 (12-14-2020)

  • added hexsticker
  • updated zenodo doi
  • added github actions
  • added cells color palette
  • favicons
  • Fixed in-text citations in README

planet 0.2.34 (12-11-2020)

  • Reduced nbeta from 4 mb to 30 kb
  • Removed Matrix dependency from imports

planet 0.2.33 (12-11-2020)

planet 0.2.32 (12-11-2020)

  • Added vignettes
  • Reduced README significantly
  • Format documentation for Bioconductor style
    • Added BiocViews to DESCRIPTION
    • Wrap lines max 80 characters
  • Create CITATION
  • Add Wendy Robinson to authors

planet 0.2.3

  • Fixes data export error on linux. See #6

planet 0.2.2

  • Export nbeta, instead of keeping internal
  • This fixes the install errors
  • On linux, data objects are not properly exported. See #2

planet 0.2.1

  • added syncytiotrophoblast reference cpgs

planet 0.2.0

  • added pl_cell_cpgs_first and pl_cell_cpgs_third for cell composition inference

planet 0.1.1

  • copied glmnet:::glment_softmax code to be compatible with new glmnet version

planet 0.1.0

  • Added pl_infer_age to infer gestational age using Lee Y et al. placental DNAm clock.
  • Modified example data to contain less probes and more samples, to save space but still be useful in the examples.

planet 0.0.1.9000

  • Added a NEWS.md file to track changes to the package.